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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.27.1

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-02-27, 09:19 PST based on data in: /BIO4/JSeo/UCLA/PSMA/STAR_output

        General Statistics

        Showing 69/69 rows and 2/6 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimapped
        Tu01-SSU-17-01578_L6_ds.0e2661f1ae57487c90160f644effd367
        49.9M
        48.6M
        97.4%
        43.4M
        87.0%
        5.2M
        Tu02-SSU-17-05920_L6_ds
        36.9M
        33.6M
        91.0%
        30.5M
        82.6%
        3.1M
        Tu03-SSW-17-19048_L6_ds.4a7eee9c7573448eb8476a335bf4a7ee
        41.7M
        40.6M
        97.5%
        33.0M
        79.3%
        7.6M
        Tu04-SSW-17-25773_L6_ds.a3225ced74da493b9fe0a3fc3984151d
        36.7M
        36.0M
        98.3%
        33.9M
        92.4%
        2.1M
        Tu05-SSW-17-26286_L6_ds.51a96695e2fd4a0591a1e5b69da74b2d
        40.6M
        39.7M
        97.6%
        36.3M
        89.3%
        3.4M
        Tu06-SSW-18-03623_L6_ds.c6bfce581e7f4fa2a01c9f299eb9a78a
        27.0M
        10.9M
        40.3%
        10.4M
        38.5%
        0.5M
        Tu07-SSU-17-12780_L6_ds.32a66f02b4e24f5fbe1c26202f78ba88
        35.8M
        26.2M
        73.0%
        20.1M
        56.2%
        6.0M
        Tu08-SSU-18-01790_L6_ds.a03a64428e4a4b618d3e76eaf6700e8c
        37.4M
        28.2M
        75.4%
        23.2M
        62.1%
        5.0M
        Tu09-SSW-18-00437_L6_ds.d4370929709f426ab586e47462935e7a
        36.9M
        34.7M
        94.1%
        27.3M
        74.1%
        7.4M
        Tu10-SSW-18-09187_L6_ds.e9682b6a686f48c885db41d51a3320f5
        28.6M
        0.9M
        3.0%
        0.8M
        2.7%
        0.1M
        Tu11-SSW-18-08336_L6_ds.a2fbbbecba5d448dad7fd92f1554989f
        29.0M
        3.1M
        10.9%
        2.8M
        9.7%
        0.3M
        Tu12-SSW-18-15123_L6_ds.8b9584b91b1c4b87881e66d506ded8e4
        39.8M
        38.5M
        96.6%
        34.6M
        87.0%
        3.9M
        Tu13-SSW-18-15123_L6_ds.312b77c29fe9414da7f5e1b982a55faa
        42.4M
        41.0M
        96.7%
        33.8M
        79.6%
        7.3M
        Tu14-SSW-18-15123_L6_ds.f9e87dd2d4e14e418d2d6fde0b393211
        37.2M
        36.2M
        97.4%
        30.3M
        81.6%
        5.9M
        Tu15-SSW-18-21924_L6_ds.ba0269439ea14e9fa608f265fe96dd7c
        41.6M
        40.5M
        97.4%
        32.8M
        78.8%
        7.7M
        Tu16-SSU-18-09500_L6_ds.07905bddc901440dbf202b3ad8fe8909
        47.3M
        46.4M
        98.2%
        44.5M
        94.1%
        1.9M
        Tu17-SSU-18-09917_L6_ds.94aa2b0ff69547d9b066b2813d520b6e
        38.2M
        36.9M
        96.8%
        32.8M
        86.1%
        4.1M
        Tu18-SSW-18-21177_L6_ds.e4a167d05f6242348de6b27c339b6521
        36.0M
        22.9M
        63.6%
        13.3M
        37.0%
        9.6M
        Tu19-SSW-18-21177_L6_ds.2013fe9250dc401fa50681d602cc23cf
        37.0M
        25.1M
        67.9%
        21.3M
        57.7%
        3.8M
        Tu20-SSW-18-21972_L6_ds.4f9cfed76b3b456d973f98efc434979c
        41.4M
        40.3M
        97.5%
        35.8M
        86.4%
        4.6M
        Tu21-SSW-18-25614_L6_ds.31f19ea0ec024a4383d9d0776885d5c0
        37.3M
        35.8M
        96.0%
        21.1M
        56.6%
        14.7M
        Tu22-SSW-18-25614_L6_ds.5ef411b29e0d41d0bb8d867b795a594c
        36.0M
        33.1M
        91.9%
        28.5M
        79.3%
        4.5M
        Tu23-SSW-18-26865_L6_ds.2d4aaf18ad0b468a901cd3c3ba14f0bd
        42.3M
        41.4M
        97.9%
        39.4M
        93.2%
        2.0M
        Tu24-SSW-19-03158_L6_ds.9a2afcad2b954318ad903bb189ead57e
        38.9M
        38.0M
        97.6%
        35.8M
        91.8%
        2.2M
        Tu25-SSW-19-08792_L6_ds.2ab8873579be40698b30bf4b161a6ce9
        40.5M
        38.6M
        95.2%
        35.2M
        86.9%
        3.4M
        Tu27-SSW-19-11127_L6_ds.f82ab512462541a0aaebca0d82a5bca4
        37.6M
        36.2M
        96.2%
        31.7M
        84.2%
        4.5M
        Tu28-SSW-19-08679_L6_ds.cdd7ef330a214fbabf4945a2761e12ee
        34.8M
        34.1M
        98.1%
        32.1M
        92.4%
        2.0M
        Tu29-SSW-19-08679_L6_ds.e76b68416cb24283b0b0e4366e917b1f
        41.4M
        39.4M
        95.0%
        33.3M
        80.3%
        6.1M
        Tu30-SSW-19-11106_L6_ds.9211859ffd8446f0b185c2d45a6db7e2
        40.5M
        39.0M
        96.2%
        36.3M
        89.6%
        2.7M
        Tu31-SSW-19-11106_L6_ds.987c32bef9ad4e59ae6dfc8e6c0e962d
        38.4M
        37.0M
        96.3%
        29.9M
        77.9%
        7.1M
        Tu32-SSW-19-16434_L6_ds.6b00f91e80f745549a454609518c617a
        21.0M
        13.3M
        63.4%
        11.9M
        56.9%
        1.4M
        Tu33-SSW-19-20545_L6_ds.db5cbfbb51cb4813bc842bdccef83eb9
        44.6M
        43.3M
        97.1%
        39.6M
        88.9%
        3.7M
        Tu34-SSW-19-17421_L6_ds.a43290985a5144d19e76596a9d598931
        41.8M
        40.5M
        96.9%
        32.9M
        78.8%
        7.6M
        Tu35-SSW-19-20955_L6_ds.509888dc28914bada9d233cb5c9ccd8d
        6.1M
        3.3M
        54.9%
        1.5M
        24.3%
        1.9M
        Tu36-SSW-18-23322_L6_ds.36811c6472a04e899f1921173b064075
        28.4M
        11.5M
        40.4%
        9.4M
        33.0%
        2.1M
        Tu37-SSW-18-23322_L6_ds.18c918da6dc54027b742f0146b040aa9
        39.8M
        38.9M
        97.8%
        36.9M
        92.8%
        2.0M
        Tu38-SSW-18-23322_L6_ds.e10f8081a0044648a48853961ef0e885
        36.4M
        35.0M
        95.9%
        30.6M
        84.0%
        4.3M
        Tu39-SSW-18-28062_L6_ds.1cbbd583f412403791db119cc4898e31
        41.4M
        39.4M
        95.1%
        33.7M
        81.4%
        5.7M
        Tu40-SSW-19-03362_L6_ds.6eb53737963544ebab3ec9bd91d0ad1d
        28.2M
        26.2M
        92.9%
        8.7M
        31.0%
        17.4M
        Tu41-SSW-19-09322_L6_ds.86381ded9e9044c990a81b7afb1ec77e
        44.1M
        41.9M
        95.1%
        36.7M
        83.3%
        5.2M
        Tu42-SSW-20-02006_L6_ds.f091092ca6ff4755951089f83960b6d9
        42.8M
        41.4M
        96.7%
        37.4M
        87.3%
        4.0M
        Tu43-SSW-21-08161_L6_ds.dd28023bbe094a0d892b814e14d29073
        2.3M
        0.9M
        38.8%
        0.8M
        34.1%
        0.1M
        Tu44-SSW-20-25251_L6_ds.a42861ecf9864a83b201ac43640b4920
        39.9M
        38.9M
        97.5%
        34.7M
        86.9%
        4.2M
        Tu45-SSW-20-25251_L6_ds.4d10fc792e60480ca7ff5eb3ee2e4735
        20.0M
        17.3M
        86.3%
        10.0M
        49.8%
        7.3M
        Tu46-SSW-21-00440_L6_ds.e685e80d31324ac08b1d5cfaf7032a07
        32.3M
        30.6M
        94.6%
        27.2M
        84.3%
        3.4M
        Tu47-SSW-20-16894_L6_ds.20bca30b6478462ea86c60823928f01a
        4.8M
        3.4M
        70.3%
        2.9M
        60.9%
        0.5M
        Tu48-SSW-20-19610_L6_ds.30d2a4ce244c4520bb4562595b71f519
        14.1M
        11.1M
        78.4%
        8.3M
        58.9%
        2.8M
        Tu49-SSW-20-22066_L6_ds.86477b73bce54a5cb8a88af1a2034bab
        17.4M
        15.7M
        90.4%
        8.7M
        50.0%
        7.0M
        Tu50-SSW-21-02477_L6_ds.c7737b369cbf4d8ca7aa791f64a819c3
        9.9M
        7.2M
        72.3%
        6.1M
        61.8%
        1.0M
        Tu51-SSW-20-23191_L6_ds.167b95fbe2d1413dac1095c49405dd70
        0.3M
        0.1M
        41.3%
        0.1M
        34.4%
        0.0M
        Tu52-SSW-20-23950_L6_ds.4ed2be67ce0a482cb15a4c83a4a05e44
        30.9M
        29.4M
        95.2%
        28.1M
        90.8%
        1.4M
        Tu53-SSW-20-25415_L6_ds.282745a8bb6d4707a2aba7e1d78a468c
        34.8M
        33.1M
        95.0%
        30.3M
        87.1%
        2.8M
        Tu54-SSW-21-01930_L6_ds.bb0469dc18344dd7aea0a4892aa9887f
        10.3M
        8.1M
        78.8%
        2.5M
        24.2%
        5.6M
        Tu55-SSW-21-06354_L6_ds.fb4f95167c374b9f9fe88b038efc6bfa
        4.6M
        3.5M
        76.3%
        3.1M
        67.8%
        0.4M
        Tu56-SSW-21-16454_L6_ds.0f5e8c6e9f3e472285b0fd29e841598f
        46.4M
        44.7M
        96.4%
        42.0M
        90.6%
        2.7M
        Tu57-SSW-21-07964_L6_ds.8d11b789516c48da878a5b35404bc0b3
        46.9M
        44.5M
        94.8%
        42.0M
        89.6%
        2.5M
        Tu58-SSW-21-08904_L6_ds.1fb9e3e101994f1eb2a230798074f2fc
        37.2M
        35.8M
        96.4%
        29.5M
        79.4%
        6.3M
        Tu59-SSW-21-10938_L6_ds.d43b9aaef43e441cbaeb331b16538aed
        53.4M
        51.8M
        96.9%
        45.2M
        84.5%
        6.6M
        Tu60-SSW-21-12058_L6_ds.69ae5474e4de483a8611c5b10ab97948
        39.5M
        38.3M
        96.8%
        35.7M
        90.3%
        2.6M
        Tu61-SSW-21-12058_L6_ds.0e8e202b61df4fdeaffaf8c4b373e80f
        40.5M
        39.5M
        97.7%
        37.0M
        91.5%
        2.5M
        Tu62-SSW-21-12160_L6_ds.0402e2ca8ffe4437965727cbe6ab30cc
        29.6M
        28.6M
        96.5%
        16.0M
        54.1%
        12.6M
        Tu63-SSW-21-13334_L6_ds.af2a511cf91346c68ea9532b2a97ec8f
        41.7M
        40.6M
        97.3%
        33.5M
        80.3%
        7.1M
        Tu65-SSW-21-18824_L6_ds.ade678c449414cfd82ca334302e953a0
        12.9M
        12.5M
        97.1%
        11.7M
        91.3%
        0.7M
        Tu66-SSW-21-18967_L6_ds.95aaf525092242fda41fed5cbdf1e2bc
        32.7M
        31.7M
        97.0%
        25.1M
        76.6%
        6.7M
        Tu67-SSW-21-21772_L6_ds.13b3bb8b66d94230a191a242dc9eaecf
        41.0M
        40.3M
        98.2%
        37.3M
        91.0%
        2.9M
        Tu68-SSW-21-23514_L6_ds.97e059e301c640b88c515cd5b231e674
        32.4M
        31.5M
        97.1%
        29.8M
        92.0%
        1.7M
        Tu69-SSW-21-23548_L6_ds.8f9ea79a7d0b4aeea1a70bfdc993ec77
        39.4M
        38.4M
        97.6%
        32.5M
        82.5%
        5.9M
        Tu70-SSW-21-23650_L6_ds.07908fa7f7754809a11f5470c6441726
        50.5M
        49.3M
        97.7%
        45.1M
        89.2%
        4.3M
        Tu71-SSW-21-24145_L6_ds.e979e1d3ed5b42a8810622fb67056135
        32.3M
        29.6M
        91.6%
        20.2M
        62.5%
        9.4M

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 69/69 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        Tu01-SSU-17-01578_L6_ds.0e2661f1ae57487c90160f644effd367
        49.9M
        48.6M
        97.4%
        43.4M
        87.0%
        5.2M
        245.0bp
        247.4bp
        5.9M
        5.7M
        5.8M
        0.1M
        0.0M
        0.1M
        0.6%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu02-SSU-17-05920_L6_ds
        36.9M
        33.6M
        91.0%
        30.5M
        82.6%
        3.1M
        232.0bp
        231.1bp
        2.6M
        2.3M
        2.5M
        0.0M
        0.0M
        0.1M
        0.8%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu03-SSW-17-19048_L6_ds.4a7eee9c7573448eb8476a335bf4a7ee
        41.7M
        40.6M
        97.5%
        33.0M
        79.3%
        7.6M
        253.0bp
        256.1bp
        4.3M
        4.1M
        4.1M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu04-SSW-17-25773_L6_ds.a3225ced74da493b9fe0a3fc3984151d
        36.7M
        36.0M
        98.3%
        33.9M
        92.4%
        2.1M
        279.0bp
        278.8bp
        4.5M
        4.3M
        4.3M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.1bp
        0.0%
        1.7bp
        Tu05-SSW-17-26286_L6_ds.51a96695e2fd4a0591a1e5b69da74b2d
        40.6M
        39.7M
        97.6%
        36.3M
        89.3%
        3.4M
        259.0bp
        260.7bp
        4.6M
        4.4M
        4.5M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu06-SSW-18-03623_L6_ds.c6bfce581e7f4fa2a01c9f299eb9a78a
        27.0M
        10.9M
        40.3%
        10.4M
        38.5%
        0.5M
        288.0bp
        278.8bp
        0.6M
        0.5M
        0.5M
        0.0M
        0.0M
        0.0M
        0.6%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu07-SSU-17-12780_L6_ds.32a66f02b4e24f5fbe1c26202f78ba88
        35.8M
        26.2M
        73.0%
        20.1M
        56.2%
        6.0M
        266.0bp
        263.1bp
        3.8M
        3.7M
        3.7M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu08-SSU-18-01790_L6_ds.a03a64428e4a4b618d3e76eaf6700e8c
        37.4M
        28.2M
        75.4%
        23.2M
        62.1%
        5.0M
        252.0bp
        245.5bp
        3.1M
        2.9M
        3.0M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu09-SSW-18-00437_L6_ds.d4370929709f426ab586e47462935e7a
        36.9M
        34.7M
        94.1%
        27.3M
        74.1%
        7.4M
        235.0bp
        239.1bp
        3.3M
        3.1M
        3.2M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu10-SSW-18-09187_L6_ds.e9682b6a686f48c885db41d51a3320f5
        28.6M
        0.9M
        3.0%
        0.8M
        2.7%
        0.1M
        293.0bp
        282.4bp
        0.1M
        0.1M
        0.1M
        0.0M
        0.0M
        0.0M
        0.3%
        0.0%
        1.7bp
        0.0%
        1.9bp
        Tu11-SSW-18-08336_L6_ds.a2fbbbecba5d448dad7fd92f1554989f
        29.0M
        3.1M
        10.9%
        2.8M
        9.7%
        0.3M
        293.0bp
        283.0bp
        0.2M
        0.2M
        0.2M
        0.0M
        0.0M
        0.0M
        0.5%
        0.0%
        2.0bp
        0.0%
        1.9bp
        Tu12-SSW-18-15123_L6_ds.8b9584b91b1c4b87881e66d506ded8e4
        39.8M
        38.5M
        96.6%
        34.6M
        87.0%
        3.9M
        246.0bp
        248.3bp
        3.8M
        3.6M
        3.6M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu13-SSW-18-15123_L6_ds.312b77c29fe9414da7f5e1b982a55faa
        42.4M
        41.0M
        96.7%
        33.8M
        79.6%
        7.3M
        241.0bp
        242.7bp
        3.3M
        3.0M
        3.1M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu14-SSW-18-15123_L6_ds.f9e87dd2d4e14e418d2d6fde0b393211
        37.2M
        36.2M
        97.4%
        30.3M
        81.6%
        5.9M
        248.0bp
        252.1bp
        3.7M
        3.5M
        3.6M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu15-SSW-18-21924_L6_ds.ba0269439ea14e9fa608f265fe96dd7c
        41.6M
        40.5M
        97.4%
        32.8M
        78.8%
        7.7M
        251.0bp
        252.3bp
        4.7M
        4.5M
        4.6M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu16-SSU-18-09500_L6_ds.07905bddc901440dbf202b3ad8fe8909
        47.3M
        46.4M
        98.2%
        44.5M
        94.1%
        1.9M
        282.0bp
        281.7bp
        6.2M
        6.0M
        6.1M
        0.1M
        0.0M
        0.1M
        0.4%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu17-SSU-18-09917_L6_ds.94aa2b0ff69547d9b066b2813d520b6e
        38.2M
        36.9M
        96.8%
        32.8M
        86.1%
        4.1M
        250.0bp
        251.8bp
        3.6M
        3.4M
        3.5M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu18-SSW-18-21177_L6_ds.e4a167d05f6242348de6b27c339b6521
        36.0M
        22.9M
        63.6%
        13.3M
        37.0%
        9.6M
        275.0bp
        276.1bp
        2.0M
        1.7M
        1.8M
        0.0M
        0.0M
        0.1M
        0.9%
        0.1%
        2.3bp
        0.0%
        1.9bp
        Tu19-SSW-18-21177_L6_ds.2013fe9250dc401fa50681d602cc23cf
        37.0M
        25.1M
        67.9%
        21.3M
        57.7%
        3.8M
        274.0bp
        269.2bp
        2.7M
        2.6M
        2.7M
        0.0M
        0.0M
        0.0M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu20-SSW-18-21972_L6_ds.4f9cfed76b3b456d973f98efc434979c
        41.4M
        40.3M
        97.5%
        35.8M
        86.4%
        4.6M
        264.0bp
        265.4bp
        5.4M
        5.2M
        5.3M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.8bp
        0.0%
        1.6bp
        Tu21-SSW-18-25614_L6_ds.31f19ea0ec024a4383d9d0776885d5c0
        37.3M
        35.8M
        96.0%
        21.1M
        56.6%
        14.7M
        245.0bp
        249.2bp
        5.0M
        4.7M
        4.8M
        0.0M
        0.0M
        0.1M
        0.8%
        0.1%
        1.8bp
        0.0%
        1.6bp
        Tu22-SSW-18-25614_L6_ds.5ef411b29e0d41d0bb8d867b795a594c
        36.0M
        33.1M
        91.9%
        28.5M
        79.3%
        4.5M
        274.0bp
        275.1bp
        4.8M
        4.5M
        4.6M
        0.0M
        0.0M
        0.1M
        0.8%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu23-SSW-18-26865_L6_ds.2d4aaf18ad0b468a901cd3c3ba14f0bd
        42.3M
        41.4M
        97.9%
        39.4M
        93.2%
        2.0M
        269.0bp
        269.1bp
        4.6M
        4.3M
        4.4M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        2.1bp
        0.0%
        1.6bp
        Tu24-SSW-19-03158_L6_ds.9a2afcad2b954318ad903bb189ead57e
        38.9M
        38.0M
        97.6%
        35.8M
        91.8%
        2.2M
        276.0bp
        276.1bp
        5.6M
        5.4M
        5.5M
        0.1M
        0.0M
        0.1M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.7bp
        Tu25-SSW-19-08792_L6_ds.2ab8873579be40698b30bf4b161a6ce9
        40.5M
        38.6M
        95.2%
        35.2M
        86.9%
        3.4M
        256.0bp
        257.4bp
        5.2M
        5.0M
        5.1M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu27-SSW-19-11127_L6_ds.f82ab512462541a0aaebca0d82a5bca4
        37.6M
        36.2M
        96.2%
        31.7M
        84.2%
        4.5M
        251.0bp
        253.0bp
        4.7M
        4.5M
        4.6M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu28-SSW-19-08679_L6_ds.cdd7ef330a214fbabf4945a2761e12ee
        34.8M
        34.1M
        98.1%
        32.1M
        92.4%
        2.0M
        277.0bp
        277.2bp
        4.9M
        4.7M
        4.7M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu29-SSW-19-08679_L6_ds.e76b68416cb24283b0b0e4366e917b1f
        41.4M
        39.4M
        95.0%
        33.3M
        80.3%
        6.1M
        219.0bp
        222.6bp
        4.4M
        4.2M
        4.3M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu30-SSW-19-11106_L6_ds.9211859ffd8446f0b185c2d45a6db7e2
        40.5M
        39.0M
        96.2%
        36.3M
        89.6%
        2.7M
        262.0bp
        262.6bp
        5.5M
        5.3M
        5.4M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu31-SSW-19-11106_L6_ds.987c32bef9ad4e59ae6dfc8e6c0e962d
        38.4M
        37.0M
        96.3%
        29.9M
        77.9%
        7.1M
        242.0bp
        245.2bp
        4.8M
        4.5M
        4.6M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu32-SSW-19-16434_L6_ds.6b00f91e80f745549a454609518c617a
        21.0M
        13.3M
        63.4%
        11.9M
        56.9%
        1.4M
        271.0bp
        264.0bp
        1.1M
        1.0M
        1.0M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu33-SSW-19-20545_L6_ds.db5cbfbb51cb4813bc842bdccef83eb9
        44.6M
        43.3M
        97.1%
        39.6M
        88.9%
        3.7M
        262.0bp
        262.9bp
        5.5M
        5.3M
        5.4M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu34-SSW-19-17421_L6_ds.a43290985a5144d19e76596a9d598931
        41.8M
        40.5M
        96.9%
        32.9M
        78.8%
        7.6M
        240.0bp
        243.8bp
        6.0M
        5.7M
        5.8M
        0.1M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu35-SSW-19-20955_L6_ds.509888dc28914bada9d233cb5c9ccd8d
        6.1M
        3.3M
        54.9%
        1.5M
        24.3%
        1.9M
        271.0bp
        271.0bp
        0.2M
        0.1M
        0.2M
        0.0M
        0.0M
        0.0M
        1.0%
        0.0%
        1.9bp
        0.0%
        1.8bp
        Tu36-SSW-18-23322_L6_ds.36811c6472a04e899f1921173b064075
        28.4M
        11.5M
        40.4%
        9.4M
        33.0%
        2.1M
        279.0bp
        264.5bp
        1.5M
        1.4M
        1.4M
        0.0M
        0.0M
        0.0M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu37-SSW-18-23322_L6_ds.18c918da6dc54027b742f0146b040aa9
        39.8M
        38.9M
        97.8%
        36.9M
        92.8%
        2.0M
        269.0bp
        269.5bp
        4.2M
        4.0M
        4.1M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu38-SSW-18-23322_L6_ds.e10f8081a0044648a48853961ef0e885
        36.4M
        35.0M
        95.9%
        30.6M
        84.0%
        4.3M
        241.0bp
        242.9bp
        3.2M
        3.0M
        3.1M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu39-SSW-18-28062_L6_ds.1cbbd583f412403791db119cc4898e31
        41.4M
        39.4M
        95.1%
        33.7M
        81.4%
        5.7M
        249.0bp
        250.3bp
        3.8M
        3.6M
        3.7M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu40-SSW-19-03362_L6_ds.6eb53737963544ebab3ec9bd91d0ad1d
        28.2M
        26.2M
        92.9%
        8.7M
        31.0%
        17.4M
        255.0bp
        260.2bp
        1.9M
        1.8M
        1.9M
        0.0M
        0.0M
        0.0M
        0.9%
        0.1%
        1.8bp
        0.0%
        1.6bp
        Tu41-SSW-19-09322_L6_ds.86381ded9e9044c990a81b7afb1ec77e
        44.1M
        41.9M
        95.1%
        36.7M
        83.3%
        5.2M
        246.0bp
        247.8bp
        5.8M
        5.5M
        5.7M
        0.1M
        0.0M
        0.1M
        0.8%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu42-SSW-20-02006_L6_ds.f091092ca6ff4755951089f83960b6d9
        42.8M
        41.4M
        96.7%
        37.4M
        87.3%
        4.0M
        251.0bp
        252.1bp
        6.2M
        6.0M
        6.1M
        0.1M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu43-SSW-21-08161_L6_ds.dd28023bbe094a0d892b814e14d29073
        2.3M
        0.9M
        38.8%
        0.8M
        34.1%
        0.1M
        269.0bp
        262.4bp
        0.1M
        0.1M
        0.1M
        0.0M
        0.0M
        0.0M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.7bp
        Tu44-SSW-20-25251_L6_ds.a42861ecf9864a83b201ac43640b4920
        39.9M
        38.9M
        97.5%
        34.7M
        86.9%
        4.2M
        252.0bp
        254.5bp
        5.2M
        5.0M
        5.0M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu45-SSW-20-25251_L6_ds.4d10fc792e60480ca7ff5eb3ee2e4735
        20.0M
        17.3M
        86.3%
        10.0M
        49.8%
        7.3M
        258.0bp
        262.6bp
        1.3M
        1.2M
        1.3M
        0.0M
        0.0M
        0.0M
        0.8%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu46-SSW-21-00440_L6_ds.e685e80d31324ac08b1d5cfaf7032a07
        32.3M
        30.6M
        94.6%
        27.2M
        84.3%
        3.4M
        264.0bp
        265.6bp
        3.4M
        3.2M
        3.3M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu47-SSW-20-16894_L6_ds.20bca30b6478462ea86c60823928f01a
        4.8M
        3.4M
        70.3%
        2.9M
        60.9%
        0.5M
        273.0bp
        273.4bp
        0.4M
        0.4M
        0.4M
        0.0M
        0.0M
        0.0M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu48-SSW-20-19610_L6_ds.30d2a4ce244c4520bb4562595b71f519
        14.1M
        11.1M
        78.4%
        8.3M
        58.9%
        2.8M
        272.0bp
        271.9bp
        1.8M
        1.8M
        1.8M
        0.0M
        0.0M
        0.0M
        0.6%
        0.1%
        1.8bp
        0.0%
        1.4bp
        Tu49-SSW-20-22066_L6_ds.86477b73bce54a5cb8a88af1a2034bab
        17.4M
        15.7M
        90.4%
        8.7M
        50.0%
        7.0M
        262.0bp
        268.6bp
        1.7M
        1.6M
        1.6M
        0.0M
        0.0M
        0.0M
        0.9%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu50-SSW-21-02477_L6_ds.c7737b369cbf4d8ca7aa791f64a819c3
        9.9M
        7.2M
        72.3%
        6.1M
        61.8%
        1.0M
        278.0bp
        279.1bp
        2.6M
        2.6M
        2.6M
        0.0M
        0.0M
        0.0M
        0.5%
        0.0%
        2.0bp
        0.0%
        1.6bp
        Tu51-SSW-20-23191_L6_ds.167b95fbe2d1413dac1095c49405dd70
        0.3M
        0.1M
        41.3%
        0.1M
        34.4%
        0.0M
        256.0bp
        261.4bp
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.0M
        0.6%
        0.0%
        2.0bp
        0.0%
        1.5bp
        Tu52-SSW-20-23950_L6_ds.4ed2be67ce0a482cb15a4c83a4a05e44
        30.9M
        29.4M
        95.2%
        28.1M
        90.8%
        1.4M
        242.0bp
        241.7bp
        2.8M
        2.6M
        2.7M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu53-SSW-20-25415_L6_ds.282745a8bb6d4707a2aba7e1d78a468c
        34.8M
        33.1M
        95.0%
        30.3M
        87.1%
        2.8M
        268.0bp
        268.9bp
        4.3M
        4.1M
        4.2M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu54-SSW-21-01930_L6_ds.bb0469dc18344dd7aea0a4892aa9887f
        10.3M
        8.1M
        78.8%
        2.5M
        24.2%
        5.6M
        251.0bp
        260.1bp
        0.4M
        0.3M
        0.3M
        0.0M
        0.0M
        0.0M
        0.9%
        0.1%
        2.0bp
        0.0%
        1.9bp
        Tu55-SSW-21-06354_L6_ds.fb4f95167c374b9f9fe88b038efc6bfa
        4.6M
        3.5M
        76.3%
        3.1M
        67.8%
        0.4M
        271.0bp
        272.9bp
        0.5M
        0.5M
        0.5M
        0.0M
        0.0M
        0.0M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu56-SSW-21-16454_L6_ds.0f5e8c6e9f3e472285b0fd29e841598f
        46.4M
        44.7M
        96.4%
        42.0M
        90.6%
        2.7M
        242.0bp
        242.5bp
        4.9M
        4.7M
        4.8M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.1bp
        0.0%
        1.7bp
        Tu57-SSW-21-07964_L6_ds.8d11b789516c48da878a5b35404bc0b3
        46.9M
        44.5M
        94.8%
        42.0M
        89.6%
        2.5M
        269.0bp
        268.9bp
        7.3M
        7.1M
        7.1M
        0.1M
        0.0M
        0.1M
        0.4%
        0.1%
        2.0bp
        0.0%
        1.7bp
        Tu58-SSW-21-08904_L6_ds.1fb9e3e101994f1eb2a230798074f2fc
        37.2M
        35.8M
        96.4%
        29.5M
        79.4%
        6.3M
        248.0bp
        248.7bp
        5.9M
        5.7M
        5.7M
        0.1M
        0.0M
        0.1M
        0.7%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu59-SSW-21-10938_L6_ds.d43b9aaef43e441cbaeb331b16538aed
        53.4M
        51.8M
        96.9%
        45.2M
        84.5%
        6.6M
        259.0bp
        260.1bp
        8.2M
        7.9M
        8.0M
        0.1M
        0.0M
        0.1M
        0.6%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu60-SSW-21-12058_L6_ds.69ae5474e4de483a8611c5b10ab97948
        39.5M
        38.3M
        96.8%
        35.7M
        90.3%
        2.6M
        258.0bp
        259.1bp
        4.7M
        4.5M
        4.6M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu61-SSW-21-12058_L6_ds.0e8e202b61df4fdeaffaf8c4b373e80f
        40.5M
        39.5M
        97.7%
        37.0M
        91.5%
        2.5M
        268.0bp
        269.0bp
        5.0M
        4.8M
        4.9M
        0.0M
        0.0M
        0.1M
        0.7%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu62-SSW-21-12160_L6_ds.0402e2ca8ffe4437965727cbe6ab30cc
        29.6M
        28.6M
        96.5%
        16.0M
        54.1%
        12.6M
        272.0bp
        274.6bp
        4.3M
        4.2M
        4.2M
        0.0M
        0.0M
        0.0M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu63-SSW-21-13334_L6_ds.af2a511cf91346c68ea9532b2a97ec8f
        41.7M
        40.6M
        97.3%
        33.5M
        80.3%
        7.1M
        255.0bp
        256.4bp
        5.0M
        4.8M
        4.9M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu65-SSW-21-18824_L6_ds.ade678c449414cfd82ca334302e953a0
        12.9M
        12.5M
        97.1%
        11.7M
        91.3%
        0.7M
        280.0bp
        280.8bp
        1.3M
        1.2M
        1.2M
        0.0M
        0.0M
        0.0M
        0.5%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu66-SSW-21-18967_L6_ds.95aaf525092242fda41fed5cbdf1e2bc
        32.7M
        31.7M
        97.0%
        25.1M
        76.6%
        6.7M
        259.0bp
        260.8bp
        5.5M
        5.3M
        5.4M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu67-SSW-21-21772_L6_ds.13b3bb8b66d94230a191a242dc9eaecf
        41.0M
        40.3M
        98.2%
        37.3M
        91.0%
        2.9M
        272.0bp
        273.0bp
        6.7M
        6.5M
        6.6M
        0.1M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu68-SSW-21-23514_L6_ds.97e059e301c640b88c515cd5b231e674
        32.4M
        31.5M
        97.1%
        29.8M
        92.0%
        1.7M
        269.0bp
        268.9bp
        3.0M
        2.9M
        2.9M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu69-SSW-21-23548_L6_ds.8f9ea79a7d0b4aeea1a70bfdc993ec77
        39.4M
        38.4M
        97.6%
        32.5M
        82.5%
        5.9M
        266.0bp
        267.5bp
        5.6M
        5.4M
        5.5M
        0.0M
        0.0M
        0.1M
        0.6%
        0.1%
        1.9bp
        0.0%
        1.6bp
        Tu70-SSW-21-23650_L6_ds.07908fa7f7754809a11f5470c6441726
        50.5M
        49.3M
        97.7%
        45.1M
        89.2%
        4.3M
        272.0bp
        272.4bp
        6.8M
        6.6M
        6.6M
        0.1M
        0.0M
        0.1M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.6bp
        Tu71-SSW-21-24145_L6_ds.e979e1d3ed5b42a8810622fb67056135
        32.3M
        29.6M
        91.6%
        20.2M
        62.5%
        9.4M
        249.0bp
        259.5bp
        3.7M
        3.5M
        3.5M
        0.0M
        0.0M
        0.1M
        0.5%
        0.1%
        2.0bp
        0.0%
        1.7bp

        Alignment Scores

        Created with MultiQC