MultiQC Report

Toolbox

MultiQC Toolbox

Highlight Samples

Regex mode off

Rename Samples

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

Regex mode off

Show / Hide Samples

Regex mode off

Explain with AI

Configure AI settings to get explanations of plots and data in this report.

Anonymize samples off

Aspect ratio

Plot scaling

Download the raw data used to create the plots in this report below:

Format:

Note that additional data was saved in multiqc_data when this report was generated.

Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

Settings are automatically saved. You can also save named configurations below.

Save Settings

You can save the toolbox settings for this report to the browser or as a file.

Load Settings

Choose a saved report profile from the browser or load from a file:

Tool Citations

Please remember to cite the tools that you use in your analysis.

To help with this, you can download publication details of the tools mentioned in this report:

About MultiQC

This report was generated using MultiQC, version 1.27.1

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

MultiQC is developed by:

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript Disabled

MultiQC reports use JavaScript for plots and toolbox functions. It looks like you have JavaScript disabled in your web browser. Please note that many of the report functions will not work as intended.

Report generated on 2025-02-27, 09:19 PST based on data in: /BIO4/JSeo/UCLA/PSMA/STAR_output

General Statistics

Showing ⁶⁹/₆₉ rows and ²/₆ columns.

Sample Name	Total reads	Aligned	Aligned	Uniq aligned	Uniq aligned	Multimapped
Tu01-SSU-17-01578_L6_ds.0e2661f1ae57487c90160f644effd367	49.9M	48.6M	97.4%	43.4M	87.0%	5.2M
Tu02-SSU-17-05920_L6_ds	36.9M	33.6M	91.0%	30.5M	82.6%	3.1M
Tu03-SSW-17-19048_L6_ds.4a7eee9c7573448eb8476a335bf4a7ee	41.7M	40.6M	97.5%	33.0M	79.3%	7.6M
Tu04-SSW-17-25773_L6_ds.a3225ced74da493b9fe0a3fc3984151d	36.7M	36.0M	98.3%	33.9M	92.4%	2.1M
Tu05-SSW-17-26286_L6_ds.51a96695e2fd4a0591a1e5b69da74b2d	40.6M	39.7M	97.6%	36.3M	89.3%	3.4M
Tu06-SSW-18-03623_L6_ds.c6bfce581e7f4fa2a01c9f299eb9a78a	27.0M	10.9M	40.3%	10.4M	38.5%	0.5M
Tu07-SSU-17-12780_L6_ds.32a66f02b4e24f5fbe1c26202f78ba88	35.8M	26.2M	73.0%	20.1M	56.2%	6.0M
Tu08-SSU-18-01790_L6_ds.a03a64428e4a4b618d3e76eaf6700e8c	37.4M	28.2M	75.4%	23.2M	62.1%	5.0M
Tu09-SSW-18-00437_L6_ds.d4370929709f426ab586e47462935e7a	36.9M	34.7M	94.1%	27.3M	74.1%	7.4M
Tu10-SSW-18-09187_L6_ds.e9682b6a686f48c885db41d51a3320f5	28.6M	0.9M	3.0%	0.8M	2.7%	0.1M
Tu11-SSW-18-08336_L6_ds.a2fbbbecba5d448dad7fd92f1554989f	29.0M	3.1M	10.9%	2.8M	9.7%	0.3M
Tu12-SSW-18-15123_L6_ds.8b9584b91b1c4b87881e66d506ded8e4	39.8M	38.5M	96.6%	34.6M	87.0%	3.9M
Tu13-SSW-18-15123_L6_ds.312b77c29fe9414da7f5e1b982a55faa	42.4M	41.0M	96.7%	33.8M	79.6%	7.3M
Tu14-SSW-18-15123_L6_ds.f9e87dd2d4e14e418d2d6fde0b393211	37.2M	36.2M	97.4%	30.3M	81.6%	5.9M
Tu15-SSW-18-21924_L6_ds.ba0269439ea14e9fa608f265fe96dd7c	41.6M	40.5M	97.4%	32.8M	78.8%	7.7M
Tu16-SSU-18-09500_L6_ds.07905bddc901440dbf202b3ad8fe8909	47.3M	46.4M	98.2%	44.5M	94.1%	1.9M
Tu17-SSU-18-09917_L6_ds.94aa2b0ff69547d9b066b2813d520b6e	38.2M	36.9M	96.8%	32.8M	86.1%	4.1M
Tu18-SSW-18-21177_L6_ds.e4a167d05f6242348de6b27c339b6521	36.0M	22.9M	63.6%	13.3M	37.0%	9.6M
Tu19-SSW-18-21177_L6_ds.2013fe9250dc401fa50681d602cc23cf	37.0M	25.1M	67.9%	21.3M	57.7%	3.8M
Tu20-SSW-18-21972_L6_ds.4f9cfed76b3b456d973f98efc434979c	41.4M	40.3M	97.5%	35.8M	86.4%	4.6M
Tu21-SSW-18-25614_L6_ds.31f19ea0ec024a4383d9d0776885d5c0	37.3M	35.8M	96.0%	21.1M	56.6%	14.7M
Tu22-SSW-18-25614_L6_ds.5ef411b29e0d41d0bb8d867b795a594c	36.0M	33.1M	91.9%	28.5M	79.3%	4.5M
Tu23-SSW-18-26865_L6_ds.2d4aaf18ad0b468a901cd3c3ba14f0bd	42.3M	41.4M	97.9%	39.4M	93.2%	2.0M
Tu24-SSW-19-03158_L6_ds.9a2afcad2b954318ad903bb189ead57e	38.9M	38.0M	97.6%	35.8M	91.8%	2.2M
Tu25-SSW-19-08792_L6_ds.2ab8873579be40698b30bf4b161a6ce9	40.5M	38.6M	95.2%	35.2M	86.9%	3.4M
Tu27-SSW-19-11127_L6_ds.f82ab512462541a0aaebca0d82a5bca4	37.6M	36.2M	96.2%	31.7M	84.2%	4.5M
Tu28-SSW-19-08679_L6_ds.cdd7ef330a214fbabf4945a2761e12ee	34.8M	34.1M	98.1%	32.1M	92.4%	2.0M
Tu29-SSW-19-08679_L6_ds.e76b68416cb24283b0b0e4366e917b1f	41.4M	39.4M	95.0%	33.3M	80.3%	6.1M
Tu30-SSW-19-11106_L6_ds.9211859ffd8446f0b185c2d45a6db7e2	40.5M	39.0M	96.2%	36.3M	89.6%	2.7M
Tu31-SSW-19-11106_L6_ds.987c32bef9ad4e59ae6dfc8e6c0e962d	38.4M	37.0M	96.3%	29.9M	77.9%	7.1M
Tu32-SSW-19-16434_L6_ds.6b00f91e80f745549a454609518c617a	21.0M	13.3M	63.4%	11.9M	56.9%	1.4M
Tu33-SSW-19-20545_L6_ds.db5cbfbb51cb4813bc842bdccef83eb9	44.6M	43.3M	97.1%	39.6M	88.9%	3.7M
Tu34-SSW-19-17421_L6_ds.a43290985a5144d19e76596a9d598931	41.8M	40.5M	96.9%	32.9M	78.8%	7.6M
Tu35-SSW-19-20955_L6_ds.509888dc28914bada9d233cb5c9ccd8d	6.1M	3.3M	54.9%	1.5M	24.3%	1.9M
Tu36-SSW-18-23322_L6_ds.36811c6472a04e899f1921173b064075	28.4M	11.5M	40.4%	9.4M	33.0%	2.1M
Tu37-SSW-18-23322_L6_ds.18c918da6dc54027b742f0146b040aa9	39.8M	38.9M	97.8%	36.9M	92.8%	2.0M
Tu38-SSW-18-23322_L6_ds.e10f8081a0044648a48853961ef0e885	36.4M	35.0M	95.9%	30.6M	84.0%	4.3M
Tu39-SSW-18-28062_L6_ds.1cbbd583f412403791db119cc4898e31	41.4M	39.4M	95.1%	33.7M	81.4%	5.7M
Tu40-SSW-19-03362_L6_ds.6eb53737963544ebab3ec9bd91d0ad1d	28.2M	26.2M	92.9%	8.7M	31.0%	17.4M
Tu41-SSW-19-09322_L6_ds.86381ded9e9044c990a81b7afb1ec77e	44.1M	41.9M	95.1%	36.7M	83.3%	5.2M
Tu42-SSW-20-02006_L6_ds.f091092ca6ff4755951089f83960b6d9	42.8M	41.4M	96.7%	37.4M	87.3%	4.0M
Tu43-SSW-21-08161_L6_ds.dd28023bbe094a0d892b814e14d29073	2.3M	0.9M	38.8%	0.8M	34.1%	0.1M
Tu44-SSW-20-25251_L6_ds.a42861ecf9864a83b201ac43640b4920	39.9M	38.9M	97.5%	34.7M	86.9%	4.2M
Tu45-SSW-20-25251_L6_ds.4d10fc792e60480ca7ff5eb3ee2e4735	20.0M	17.3M	86.3%	10.0M	49.8%	7.3M
Tu46-SSW-21-00440_L6_ds.e685e80d31324ac08b1d5cfaf7032a07	32.3M	30.6M	94.6%	27.2M	84.3%	3.4M
Tu47-SSW-20-16894_L6_ds.20bca30b6478462ea86c60823928f01a	4.8M	3.4M	70.3%	2.9M	60.9%	0.5M
Tu48-SSW-20-19610_L6_ds.30d2a4ce244c4520bb4562595b71f519	14.1M	11.1M	78.4%	8.3M	58.9%	2.8M
Tu49-SSW-20-22066_L6_ds.86477b73bce54a5cb8a88af1a2034bab	17.4M	15.7M	90.4%	8.7M	50.0%	7.0M
Tu50-SSW-21-02477_L6_ds.c7737b369cbf4d8ca7aa791f64a819c3	9.9M	7.2M	72.3%	6.1M	61.8%	1.0M
Tu51-SSW-20-23191_L6_ds.167b95fbe2d1413dac1095c49405dd70	0.3M	0.1M	41.3%	0.1M	34.4%	0.0M
Tu52-SSW-20-23950_L6_ds.4ed2be67ce0a482cb15a4c83a4a05e44	30.9M	29.4M	95.2%	28.1M	90.8%	1.4M
Tu53-SSW-20-25415_L6_ds.282745a8bb6d4707a2aba7e1d78a468c	34.8M	33.1M	95.0%	30.3M	87.1%	2.8M
Tu54-SSW-21-01930_L6_ds.bb0469dc18344dd7aea0a4892aa9887f	10.3M	8.1M	78.8%	2.5M	24.2%	5.6M
Tu55-SSW-21-06354_L6_ds.fb4f95167c374b9f9fe88b038efc6bfa	4.6M	3.5M	76.3%	3.1M	67.8%	0.4M
Tu56-SSW-21-16454_L6_ds.0f5e8c6e9f3e472285b0fd29e841598f	46.4M	44.7M	96.4%	42.0M	90.6%	2.7M
Tu57-SSW-21-07964_L6_ds.8d11b789516c48da878a5b35404bc0b3	46.9M	44.5M	94.8%	42.0M	89.6%	2.5M
Tu58-SSW-21-08904_L6_ds.1fb9e3e101994f1eb2a230798074f2fc	37.2M	35.8M	96.4%	29.5M	79.4%	6.3M
Tu59-SSW-21-10938_L6_ds.d43b9aaef43e441cbaeb331b16538aed	53.4M	51.8M	96.9%	45.2M	84.5%	6.6M
Tu60-SSW-21-12058_L6_ds.69ae5474e4de483a8611c5b10ab97948	39.5M	38.3M	96.8%	35.7M	90.3%	2.6M
Tu61-SSW-21-12058_L6_ds.0e8e202b61df4fdeaffaf8c4b373e80f	40.5M	39.5M	97.7%	37.0M	91.5%	2.5M
Tu62-SSW-21-12160_L6_ds.0402e2ca8ffe4437965727cbe6ab30cc	29.6M	28.6M	96.5%	16.0M	54.1%	12.6M
Tu63-SSW-21-13334_L6_ds.af2a511cf91346c68ea9532b2a97ec8f	41.7M	40.6M	97.3%	33.5M	80.3%	7.1M
Tu65-SSW-21-18824_L6_ds.ade678c449414cfd82ca334302e953a0	12.9M	12.5M	97.1%	11.7M	91.3%	0.7M
Tu66-SSW-21-18967_L6_ds.95aaf525092242fda41fed5cbdf1e2bc	32.7M	31.7M	97.0%	25.1M	76.6%	6.7M
Tu67-SSW-21-21772_L6_ds.13b3bb8b66d94230a191a242dc9eaecf	41.0M	40.3M	98.2%	37.3M	91.0%	2.9M
Tu68-SSW-21-23514_L6_ds.97e059e301c640b88c515cd5b231e674	32.4M	31.5M	97.1%	29.8M	92.0%	1.7M
Tu69-SSW-21-23548_L6_ds.8f9ea79a7d0b4aeea1a70bfdc993ec77	39.4M	38.4M	97.6%	32.5M	82.5%	5.9M
Tu70-SSW-21-23650_L6_ds.07908fa7f7754809a11f5470c6441726	50.5M	49.3M	97.7%	45.1M	89.2%	4.3M
Tu71-SSW-21-24145_L6_ds.e979e1d3ed5b42a8810622fb67056135	32.3M	29.6M	91.6%	20.2M	62.5%	9.4M

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: general_stats_table_table

Sort	Group	Column	Description	ID	Scale
\|\|	STAR	Total reads	Number of input reads	`star-total_reads`	read_count
\|\|	STAR	Aligned	Mapped reads	`star-mapped`	read_count
\|\|	STAR	Aligned	% Mapped reads	`star-mapped_percent`
\|\|	STAR	Uniq aligned	Uniquely mapped reads	`star-uniquely_mapped`	read_count
\|\|	STAR	Uniq aligned	% Uniquely mapped reads	`star-uniquely_mapped_percent`
\|\|	STAR	Multimapped	Multiple mapped reads	`star-multimapped`	read_count

STAR

Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

Summary Statistics

Summary statistics from the STAR alignment

Showing ⁶⁹/₆₉ rows and ¹⁰/₁₉ columns.

Sample Name	Total reads	Aligned	Aligned	Uniq aligned	Uniq aligned	Multimapped	Avg. read len	Avg. mapped len	Splices	Annotated splices	GT/AG splices	GC/AG splices	AT/AC splices	Non-canonical splices	Mismatch rate	Del rate	Del len	Ins rate	Ins len
Tu01-SSU-17-01578_L6_ds.0e2661f1ae57487c90160f644effd367	49.9M	48.6M	97.4%	43.4M	87.0%	5.2M	245.0bp	247.4bp	5.9M	5.7M	5.8M	0.1M	0.0M	0.1M	0.6%	0.1%	2.0bp	0.0%	1.7bp
Tu02-SSU-17-05920_L6_ds	36.9M	33.6M	91.0%	30.5M	82.6%	3.1M	232.0bp	231.1bp	2.6M	2.3M	2.5M	0.0M	0.0M	0.1M	0.8%	0.1%	2.0bp	0.0%	1.6bp
Tu03-SSW-17-19048_L6_ds.4a7eee9c7573448eb8476a335bf4a7ee	41.7M	40.6M	97.5%	33.0M	79.3%	7.6M	253.0bp	256.1bp	4.3M	4.1M	4.1M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu04-SSW-17-25773_L6_ds.a3225ced74da493b9fe0a3fc3984151d	36.7M	36.0M	98.3%	33.9M	92.4%	2.1M	279.0bp	278.8bp	4.5M	4.3M	4.3M	0.0M	0.0M	0.1M	0.5%	0.1%	2.1bp	0.0%	1.7bp
Tu05-SSW-17-26286_L6_ds.51a96695e2fd4a0591a1e5b69da74b2d	40.6M	39.7M	97.6%	36.3M	89.3%	3.4M	259.0bp	260.7bp	4.6M	4.4M	4.5M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu06-SSW-18-03623_L6_ds.c6bfce581e7f4fa2a01c9f299eb9a78a	27.0M	10.9M	40.3%	10.4M	38.5%	0.5M	288.0bp	278.8bp	0.6M	0.5M	0.5M	0.0M	0.0M	0.0M	0.6%	0.1%	2.0bp	0.0%	1.6bp
Tu07-SSU-17-12780_L6_ds.32a66f02b4e24f5fbe1c26202f78ba88	35.8M	26.2M	73.0%	20.1M	56.2%	6.0M	266.0bp	263.1bp	3.8M	3.7M	3.7M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu08-SSU-18-01790_L6_ds.a03a64428e4a4b618d3e76eaf6700e8c	37.4M	28.2M	75.4%	23.2M	62.1%	5.0M	252.0bp	245.5bp	3.1M	2.9M	3.0M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu09-SSW-18-00437_L6_ds.d4370929709f426ab586e47462935e7a	36.9M	34.7M	94.1%	27.3M	74.1%	7.4M	235.0bp	239.1bp	3.3M	3.1M	3.2M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu10-SSW-18-09187_L6_ds.e9682b6a686f48c885db41d51a3320f5	28.6M	0.9M	3.0%	0.8M	2.7%	0.1M	293.0bp	282.4bp	0.1M	0.1M	0.1M	0.0M	0.0M	0.0M	0.3%	0.0%	1.7bp	0.0%	1.9bp
Tu11-SSW-18-08336_L6_ds.a2fbbbecba5d448dad7fd92f1554989f	29.0M	3.1M	10.9%	2.8M	9.7%	0.3M	293.0bp	283.0bp	0.2M	0.2M	0.2M	0.0M	0.0M	0.0M	0.5%	0.0%	2.0bp	0.0%	1.9bp
Tu12-SSW-18-15123_L6_ds.8b9584b91b1c4b87881e66d506ded8e4	39.8M	38.5M	96.6%	34.6M	87.0%	3.9M	246.0bp	248.3bp	3.8M	3.6M	3.6M	0.0M	0.0M	0.1M	0.7%	0.1%	2.0bp	0.0%	1.6bp
Tu13-SSW-18-15123_L6_ds.312b77c29fe9414da7f5e1b982a55faa	42.4M	41.0M	96.7%	33.8M	79.6%	7.3M	241.0bp	242.7bp	3.3M	3.0M	3.1M	0.0M	0.0M	0.1M	0.7%	0.1%	2.0bp	0.0%	1.6bp
Tu14-SSW-18-15123_L6_ds.f9e87dd2d4e14e418d2d6fde0b393211	37.2M	36.2M	97.4%	30.3M	81.6%	5.9M	248.0bp	252.1bp	3.7M	3.5M	3.6M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu15-SSW-18-21924_L6_ds.ba0269439ea14e9fa608f265fe96dd7c	41.6M	40.5M	97.4%	32.8M	78.8%	7.7M	251.0bp	252.3bp	4.7M	4.5M	4.6M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu16-SSU-18-09500_L6_ds.07905bddc901440dbf202b3ad8fe8909	47.3M	46.4M	98.2%	44.5M	94.1%	1.9M	282.0bp	281.7bp	6.2M	6.0M	6.1M	0.1M	0.0M	0.1M	0.4%	0.1%	2.0bp	0.0%	1.7bp
Tu17-SSU-18-09917_L6_ds.94aa2b0ff69547d9b066b2813d520b6e	38.2M	36.9M	96.8%	32.8M	86.1%	4.1M	250.0bp	251.8bp	3.6M	3.4M	3.5M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu18-SSW-18-21177_L6_ds.e4a167d05f6242348de6b27c339b6521	36.0M	22.9M	63.6%	13.3M	37.0%	9.6M	275.0bp	276.1bp	2.0M	1.7M	1.8M	0.0M	0.0M	0.1M	0.9%	0.1%	2.3bp	0.0%	1.9bp
Tu19-SSW-18-21177_L6_ds.2013fe9250dc401fa50681d602cc23cf	37.0M	25.1M	67.9%	21.3M	57.7%	3.8M	274.0bp	269.2bp	2.7M	2.6M	2.7M	0.0M	0.0M	0.0M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu20-SSW-18-21972_L6_ds.4f9cfed76b3b456d973f98efc434979c	41.4M	40.3M	97.5%	35.8M	86.4%	4.6M	264.0bp	265.4bp	5.4M	5.2M	5.3M	0.0M	0.0M	0.1M	0.6%	0.1%	1.8bp	0.0%	1.6bp
Tu21-SSW-18-25614_L6_ds.31f19ea0ec024a4383d9d0776885d5c0	37.3M	35.8M	96.0%	21.1M	56.6%	14.7M	245.0bp	249.2bp	5.0M	4.7M	4.8M	0.0M	0.0M	0.1M	0.8%	0.1%	1.8bp	0.0%	1.6bp
Tu22-SSW-18-25614_L6_ds.5ef411b29e0d41d0bb8d867b795a594c	36.0M	33.1M	91.9%	28.5M	79.3%	4.5M	274.0bp	275.1bp	4.8M	4.5M	4.6M	0.0M	0.0M	0.1M	0.8%	0.1%	2.0bp	0.0%	1.6bp
Tu23-SSW-18-26865_L6_ds.2d4aaf18ad0b468a901cd3c3ba14f0bd	42.3M	41.4M	97.9%	39.4M	93.2%	2.0M	269.0bp	269.1bp	4.6M	4.3M	4.4M	0.0M	0.0M	0.1M	0.6%	0.1%	2.1bp	0.0%	1.6bp
Tu24-SSW-19-03158_L6_ds.9a2afcad2b954318ad903bb189ead57e	38.9M	38.0M	97.6%	35.8M	91.8%	2.2M	276.0bp	276.1bp	5.6M	5.4M	5.5M	0.1M	0.0M	0.1M	0.5%	0.1%	1.9bp	0.0%	1.7bp
Tu25-SSW-19-08792_L6_ds.2ab8873579be40698b30bf4b161a6ce9	40.5M	38.6M	95.2%	35.2M	86.9%	3.4M	256.0bp	257.4bp	5.2M	5.0M	5.1M	0.0M	0.0M	0.1M	0.5%	0.1%	1.9bp	0.0%	1.6bp
Tu27-SSW-19-11127_L6_ds.f82ab512462541a0aaebca0d82a5bca4	37.6M	36.2M	96.2%	31.7M	84.2%	4.5M	251.0bp	253.0bp	4.7M	4.5M	4.6M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu28-SSW-19-08679_L6_ds.cdd7ef330a214fbabf4945a2761e12ee	34.8M	34.1M	98.1%	32.1M	92.4%	2.0M	277.0bp	277.2bp	4.9M	4.7M	4.7M	0.0M	0.0M	0.1M	0.5%	0.1%	1.9bp	0.0%	1.6bp
Tu29-SSW-19-08679_L6_ds.e76b68416cb24283b0b0e4366e917b1f	41.4M	39.4M	95.0%	33.3M	80.3%	6.1M	219.0bp	222.6bp	4.4M	4.2M	4.3M	0.0M	0.0M	0.1M	0.7%	0.1%	2.0bp	0.0%	1.7bp
Tu30-SSW-19-11106_L6_ds.9211859ffd8446f0b185c2d45a6db7e2	40.5M	39.0M	96.2%	36.3M	89.6%	2.7M	262.0bp	262.6bp	5.5M	5.3M	5.4M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu31-SSW-19-11106_L6_ds.987c32bef9ad4e59ae6dfc8e6c0e962d	38.4M	37.0M	96.3%	29.9M	77.9%	7.1M	242.0bp	245.2bp	4.8M	4.5M	4.6M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu32-SSW-19-16434_L6_ds.6b00f91e80f745549a454609518c617a	21.0M	13.3M	63.4%	11.9M	56.9%	1.4M	271.0bp	264.0bp	1.1M	1.0M	1.0M	0.0M	0.0M	0.1M	0.7%	0.1%	2.0bp	0.0%	1.7bp
Tu33-SSW-19-20545_L6_ds.db5cbfbb51cb4813bc842bdccef83eb9	44.6M	43.3M	97.1%	39.6M	88.9%	3.7M	262.0bp	262.9bp	5.5M	5.3M	5.4M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu34-SSW-19-17421_L6_ds.a43290985a5144d19e76596a9d598931	41.8M	40.5M	96.9%	32.9M	78.8%	7.6M	240.0bp	243.8bp	6.0M	5.7M	5.8M	0.1M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu35-SSW-19-20955_L6_ds.509888dc28914bada9d233cb5c9ccd8d	6.1M	3.3M	54.9%	1.5M	24.3%	1.9M	271.0bp	271.0bp	0.2M	0.1M	0.2M	0.0M	0.0M	0.0M	1.0%	0.0%	1.9bp	0.0%	1.8bp
Tu36-SSW-18-23322_L6_ds.36811c6472a04e899f1921173b064075	28.4M	11.5M	40.4%	9.4M	33.0%	2.1M	279.0bp	264.5bp	1.5M	1.4M	1.4M	0.0M	0.0M	0.0M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu37-SSW-18-23322_L6_ds.18c918da6dc54027b742f0146b040aa9	39.8M	38.9M	97.8%	36.9M	92.8%	2.0M	269.0bp	269.5bp	4.2M	4.0M	4.1M	0.0M	0.0M	0.1M	0.5%	0.1%	2.0bp	0.0%	1.6bp
Tu38-SSW-18-23322_L6_ds.e10f8081a0044648a48853961ef0e885	36.4M	35.0M	95.9%	30.6M	84.0%	4.3M	241.0bp	242.9bp	3.2M	3.0M	3.1M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu39-SSW-18-28062_L6_ds.1cbbd583f412403791db119cc4898e31	41.4M	39.4M	95.1%	33.7M	81.4%	5.7M	249.0bp	250.3bp	3.8M	3.6M	3.7M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu40-SSW-19-03362_L6_ds.6eb53737963544ebab3ec9bd91d0ad1d	28.2M	26.2M	92.9%	8.7M	31.0%	17.4M	255.0bp	260.2bp	1.9M	1.8M	1.9M	0.0M	0.0M	0.0M	0.9%	0.1%	1.8bp	0.0%	1.6bp
Tu41-SSW-19-09322_L6_ds.86381ded9e9044c990a81b7afb1ec77e	44.1M	41.9M	95.1%	36.7M	83.3%	5.2M	246.0bp	247.8bp	5.8M	5.5M	5.7M	0.1M	0.0M	0.1M	0.8%	0.1%	1.9bp	0.0%	1.6bp
Tu42-SSW-20-02006_L6_ds.f091092ca6ff4755951089f83960b6d9	42.8M	41.4M	96.7%	37.4M	87.3%	4.0M	251.0bp	252.1bp	6.2M	6.0M	6.1M	0.1M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu43-SSW-21-08161_L6_ds.dd28023bbe094a0d892b814e14d29073	2.3M	0.9M	38.8%	0.8M	34.1%	0.1M	269.0bp	262.4bp	0.1M	0.1M	0.1M	0.0M	0.0M	0.0M	0.6%	0.1%	1.9bp	0.0%	1.7bp
Tu44-SSW-20-25251_L6_ds.a42861ecf9864a83b201ac43640b4920	39.9M	38.9M	97.5%	34.7M	86.9%	4.2M	252.0bp	254.5bp	5.2M	5.0M	5.0M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu45-SSW-20-25251_L6_ds.4d10fc792e60480ca7ff5eb3ee2e4735	20.0M	17.3M	86.3%	10.0M	49.8%	7.3M	258.0bp	262.6bp	1.3M	1.2M	1.3M	0.0M	0.0M	0.0M	0.8%	0.1%	2.0bp	0.0%	1.7bp
Tu46-SSW-21-00440_L6_ds.e685e80d31324ac08b1d5cfaf7032a07	32.3M	30.6M	94.6%	27.2M	84.3%	3.4M	264.0bp	265.6bp	3.4M	3.2M	3.3M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu47-SSW-20-16894_L6_ds.20bca30b6478462ea86c60823928f01a	4.8M	3.4M	70.3%	2.9M	60.9%	0.5M	273.0bp	273.4bp	0.4M	0.4M	0.4M	0.0M	0.0M	0.0M	0.5%	0.1%	1.9bp	0.0%	1.6bp
Tu48-SSW-20-19610_L6_ds.30d2a4ce244c4520bb4562595b71f519	14.1M	11.1M	78.4%	8.3M	58.9%	2.8M	272.0bp	271.9bp	1.8M	1.8M	1.8M	0.0M	0.0M	0.0M	0.6%	0.1%	1.8bp	0.0%	1.4bp
Tu49-SSW-20-22066_L6_ds.86477b73bce54a5cb8a88af1a2034bab	17.4M	15.7M	90.4%	8.7M	50.0%	7.0M	262.0bp	268.6bp	1.7M	1.6M	1.6M	0.0M	0.0M	0.0M	0.9%	0.1%	1.9bp	0.0%	1.6bp
Tu50-SSW-21-02477_L6_ds.c7737b369cbf4d8ca7aa791f64a819c3	9.9M	7.2M	72.3%	6.1M	61.8%	1.0M	278.0bp	279.1bp	2.6M	2.6M	2.6M	0.0M	0.0M	0.0M	0.5%	0.0%	2.0bp	0.0%	1.6bp
Tu51-SSW-20-23191_L6_ds.167b95fbe2d1413dac1095c49405dd70	0.3M	0.1M	41.3%	0.1M	34.4%	0.0M	256.0bp	261.4bp	0.0M	0.0M	0.0M	0.0M	0.0M	0.0M	0.6%	0.0%	2.0bp	0.0%	1.5bp
Tu52-SSW-20-23950_L6_ds.4ed2be67ce0a482cb15a4c83a4a05e44	30.9M	29.4M	95.2%	28.1M	90.8%	1.4M	242.0bp	241.7bp	2.8M	2.6M	2.7M	0.0M	0.0M	0.1M	0.5%	0.1%	2.0bp	0.0%	1.7bp
Tu53-SSW-20-25415_L6_ds.282745a8bb6d4707a2aba7e1d78a468c	34.8M	33.1M	95.0%	30.3M	87.1%	2.8M	268.0bp	268.9bp	4.3M	4.1M	4.2M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu54-SSW-21-01930_L6_ds.bb0469dc18344dd7aea0a4892aa9887f	10.3M	8.1M	78.8%	2.5M	24.2%	5.6M	251.0bp	260.1bp	0.4M	0.3M	0.3M	0.0M	0.0M	0.0M	0.9%	0.1%	2.0bp	0.0%	1.9bp
Tu55-SSW-21-06354_L6_ds.fb4f95167c374b9f9fe88b038efc6bfa	4.6M	3.5M	76.3%	3.1M	67.8%	0.4M	271.0bp	272.9bp	0.5M	0.5M	0.5M	0.0M	0.0M	0.0M	0.5%	0.1%	2.0bp	0.0%	1.6bp
Tu56-SSW-21-16454_L6_ds.0f5e8c6e9f3e472285b0fd29e841598f	46.4M	44.7M	96.4%	42.0M	90.6%	2.7M	242.0bp	242.5bp	4.9M	4.7M	4.8M	0.0M	0.0M	0.1M	0.5%	0.1%	2.1bp	0.0%	1.7bp
Tu57-SSW-21-07964_L6_ds.8d11b789516c48da878a5b35404bc0b3	46.9M	44.5M	94.8%	42.0M	89.6%	2.5M	269.0bp	268.9bp	7.3M	7.1M	7.1M	0.1M	0.0M	0.1M	0.4%	0.1%	2.0bp	0.0%	1.7bp
Tu58-SSW-21-08904_L6_ds.1fb9e3e101994f1eb2a230798074f2fc	37.2M	35.8M	96.4%	29.5M	79.4%	6.3M	248.0bp	248.7bp	5.9M	5.7M	5.7M	0.1M	0.0M	0.1M	0.7%	0.1%	2.0bp	0.0%	1.6bp
Tu59-SSW-21-10938_L6_ds.d43b9aaef43e441cbaeb331b16538aed	53.4M	51.8M	96.9%	45.2M	84.5%	6.6M	259.0bp	260.1bp	8.2M	7.9M	8.0M	0.1M	0.0M	0.1M	0.6%	0.1%	2.0bp	0.0%	1.6bp
Tu60-SSW-21-12058_L6_ds.69ae5474e4de483a8611c5b10ab97948	39.5M	38.3M	96.8%	35.7M	90.3%	2.6M	258.0bp	259.1bp	4.7M	4.5M	4.6M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu61-SSW-21-12058_L6_ds.0e8e202b61df4fdeaffaf8c4b373e80f	40.5M	39.5M	97.7%	37.0M	91.5%	2.5M	268.0bp	269.0bp	5.0M	4.8M	4.9M	0.0M	0.0M	0.1M	0.7%	0.1%	1.9bp	0.0%	1.6bp
Tu62-SSW-21-12160_L6_ds.0402e2ca8ffe4437965727cbe6ab30cc	29.6M	28.6M	96.5%	16.0M	54.1%	12.6M	272.0bp	274.6bp	4.3M	4.2M	4.2M	0.0M	0.0M	0.0M	0.5%	0.1%	1.9bp	0.0%	1.6bp
Tu63-SSW-21-13334_L6_ds.af2a511cf91346c68ea9532b2a97ec8f	41.7M	40.6M	97.3%	33.5M	80.3%	7.1M	255.0bp	256.4bp	5.0M	4.8M	4.9M	0.0M	0.0M	0.1M	0.6%	0.1%	2.0bp	0.0%	1.6bp
Tu65-SSW-21-18824_L6_ds.ade678c449414cfd82ca334302e953a0	12.9M	12.5M	97.1%	11.7M	91.3%	0.7M	280.0bp	280.8bp	1.3M	1.2M	1.2M	0.0M	0.0M	0.0M	0.5%	0.1%	1.9bp	0.0%	1.6bp
Tu66-SSW-21-18967_L6_ds.95aaf525092242fda41fed5cbdf1e2bc	32.7M	31.7M	97.0%	25.1M	76.6%	6.7M	259.0bp	260.8bp	5.5M	5.3M	5.4M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu67-SSW-21-21772_L6_ds.13b3bb8b66d94230a191a242dc9eaecf	41.0M	40.3M	98.2%	37.3M	91.0%	2.9M	272.0bp	273.0bp	6.7M	6.5M	6.6M	0.1M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu68-SSW-21-23514_L6_ds.97e059e301c640b88c515cd5b231e674	32.4M	31.5M	97.1%	29.8M	92.0%	1.7M	269.0bp	268.9bp	3.0M	2.9M	2.9M	0.0M	0.0M	0.1M	0.5%	0.1%	2.0bp	0.0%	1.6bp
Tu69-SSW-21-23548_L6_ds.8f9ea79a7d0b4aeea1a70bfdc993ec77	39.4M	38.4M	97.6%	32.5M	82.5%	5.9M	266.0bp	267.5bp	5.6M	5.4M	5.5M	0.0M	0.0M	0.1M	0.6%	0.1%	1.9bp	0.0%	1.6bp
Tu70-SSW-21-23650_L6_ds.07908fa7f7754809a11f5470c6441726	50.5M	49.3M	97.7%	45.1M	89.2%	4.3M	272.0bp	272.4bp	6.8M	6.6M	6.6M	0.1M	0.0M	0.1M	0.5%	0.1%	2.0bp	0.0%	1.6bp
Tu71-SSW-21-24145_L6_ds.e979e1d3ed5b42a8810622fb67056135	32.3M	29.6M	91.6%	20.2M	62.5%	9.4M	249.0bp	259.5bp	3.7M	3.5M	3.5M	0.0M	0.0M	0.1M	0.5%	0.1%	2.0bp	0.0%	1.7bp

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: star_summary_table_table

Sort	Column	Description	ID	Scale
\|\|	Total reads	Number of input reads	`star-total_reads`	read_count
\|\|	Aligned	Mapped reads	`star-mapped`	read_count
\|\|	Aligned	% Mapped reads	`star-mapped_percent`
\|\|	Uniq aligned	Uniquely mapped reads	`star-uniquely_mapped`	read_count
\|\|	Uniq aligned	% Uniquely mapped reads	`star-uniquely_mapped_percent`
\|\|	Multimapped	Multiple mapped reads	`star-multimapped`	read_count
\|\|	Avg. read len	Average input read length	`star-avg_input_read_length`
\|\|	Avg. mapped len	Average mapped length	`star-avg_mapped_read_length`
\|\|	Splices	Number of splices: Total	`star-num_splices`	read_count
\|\|	Annotated splices	Number of splices: Annotated (sjdb)	`star-num_annotated_splices`	read_count
\|\|	GT/AG splices	Number of splices: GT/AG	`star-num_GTAG_splices`	read_count
\|\|	GC/AG splices	Number of splices: GC/AG	`star-num_GCAG_splices`	read_count
\|\|	AT/AC splices	Number of splices: AT/AC	`star-num_ATAC_splices`	read_count
\|\|	Non-canonical splices	Number of splices: Non-canonical	`star-num_noncanonical_splices`	read_count
\|\|	Mismatch rate	Mismatch rate per base	`star-mismatch_rate`
\|\|	Del rate	Deletion rate per base	`star-deletion_rate`
\|\|	Del len	Deletion average length	`star-deletion_length`
\|\|	Ins rate	Insertion rate per base	`star-insertion_rate`
\|\|	Ins len	Insertion average length	`star-insertion_length`

Alignment Scores

Created with MultiQC

Toggle navigation v1.27.1

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Explain with AI

Export Plots

Choose Plots

Save Settings

Load Settings

Tool Citations

About MultiQC

General Statistics

General Statistics: Columns

STAR

Summary Statistics

STAR: Summary Statistics: Columns

Alignment Scores

v1.27.1

Highlight Samples

Rename Samples

Show / Hide Samples